崔学峰（博士）
职位
l 金沙集团3354cm 教授
l 金沙集团3354cm 杰出中青年
工作经历
l 教授，金沙集团3354cm 金沙集团3354cm，2019年9月-至今
l 助理教授，清华大学 交叉信息研究院，2016年10月-2019年7月
l 博士后，沙特阿拉伯 阿卜杜拉国王科技大学 生物信息研究中心，2014年6月-2016年8月
教育背景
l 博士学位，加拿大 滑铁卢大学 计算机科学学院，2014
l 硕士学位，加拿大 滑铁卢大学 计算机科学学院，2007
l 学士学位，加拿大 滑铁卢大学 计算机科学学院，2004
科研兴趣
我对发现和解决与日常生活息息相关的计算问题有着浓厚的兴趣。这包括设计和应用深度学习和并行算法来攻克生物信息难题。我近期的主要研究工作包括以下生物信息问题：
l 基于冷冻电镜的分子结构检测
l 基于多肽疫苗的新抗原设计
l 基于宏基因组大数据的抗生素抗性基因挖掘
教学课程
l 生物信息学
l 并行算法设计与实践
发表论文（部分）
l Yuguo Zha, Hui Chong, Hao Qiu, Kai Kang, Yuzheng Dun, Zhixue Chen, Xuefeng Cui*, and Kang Ning* Ontology-aware deep learning enables ultrafast and interpretable source tracking among sub-million microbial community samples from hundreds of niches Published on Genome Medicine 2022
l Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning*, and Xuefeng Cui* ContactLib-ATT: a structure-based search engine for homologous proteins Published on IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 2022
l Zhengwei Wang, Yuxiao Wang, Xuan Zhang, Zhaoxu Meng, Zhenghe Yang, Wei Zhao*, and Xuefeng Cui* Graph-based Reaction Classification by Contrasting between Precursors and Products Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Las Vegas, USA, December 6-8, 2022
l Jingxuan Wang, Zongzhao Qiu, Xuan Zhang, Zhenghe Yang, Wei Zhao*, and Xuefeng Cui* Boosting Deep Learning-based Docking with Cross-attention and Centrality Embedding Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Las Vegas, USA, December 6-8, 2022
l Xuan Zhang, Cheng Chen, Zhaoxu Meng, Zhenghe Yang, Haitao Jiang*, and Xuefeng Cui* CoAtGIN: Marrying Convolution and Attention for Graph-basedMolecule Property Prediction Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Las Vegas, USA, December 6-8, 2022
l Yuxiao Wang, Zongzhao Qiu, Qihong Jiao, Cheng Chen, Zhaoxu Meng, and Xuefeng Cui* Structure-Based Protein-Drug Affinity Prediction with Spatial Attention Mechanisms Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Virtual Conference, December 9-12, 2021
l Qihong Jiao, Zongzhao Qiu, Yuxiao Wang, Cheng Chen, Zhenghe Yang*, and Xuefeng Cui* Edge-Gated Graph Neural Network for Predicting Protein-Ligand Binding Affinities Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Virtual Conference, December 9-12, 2021
l Cheng Chen, Zongzhao Qiu, Zhenghe Yang, Bin Yu*, and Xuefeng Cui* Jointly Learning to Align and Aggregate with Cross Attention Pooling for Peptide-MHC Class I Binding Prediction Published on IEEE International Conference on Bioinformatics and Biomedicine (IEEE-BIBM), Virtual Conference, December 9-12, 2021
